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1

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Francisco, California (Sunday 23 January 2011)] Visualization and Data Analysis 2011 - A pseudo-haptic knot diagram interface

Zhang, Hui, Weng, Jianguang, Hanson, Andrew J., Wong, Pak Chung, Park, Jinah, Hao, Ming C., Chen, Chaomei, Börner, Katy, Kao, David L., Roberts, Jonathan C.

Année:

2011

Langue:

english

Fichier:

PDF, 4.58 MB

english, 2011

2

Simultaneous conversion of all cell wall components by an oleaginous fungus without chemi-physical pretreatment

Xie, Shangxian, Qin, Xing, Cheng, Yanbing, Laskar, Dhrubojyoti, Qiao, Weichuan, Sun, Su, Reyes, Luis H., Wang, Xin, Dai, Susie Y., Sattler, Scott E., Kao, Katy, Yang, Bin, Zhang, Xiaoyu, Yuan, Joshua

Journal:

Green Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2015

3

A Within-subjects Experimental Protocol to Assess the Effects of Social Input on Infant EEG

St. John, Ashley M., Kao, Katie, Chita-Tegmark, Meia, Liederman, Jacqueline, Grieve, Philip G., Tarullo, Amanda R.

Journal:

Journal of Visualized Experiments

Année:

2017

Langue:

english

Fichier:

PDF, 373 KB

english, 2017

4

Synergistic Maximization of Carbohydrate Output and Lignin Processibility by Combinatorial Pretreatment

Liu, Zhi-Hua, Olson, Michelle, Shinde, Somnath Dattatray, Wang, Xin, Hao, Naijia, Yoo, Chang Geun, Bhagia, Samarthya, Dunlap, John R., Pu, Yunqiao, Kao, Katy, Ragauskas, Arthur, Jin, Mingjie, Yuan, J

Journal:

Green Chemistry

Année:

2017

Langue:

english

Fichier:

PDF, 3.88 MB

english, 2017

5

Enhanced acarbose production by Streptomyces M37 using a two-stage fermentation strategy

Ren, Fei, Chen, Long, Xiong, Shuangli, Tong, Qunyi, Kao, Katy C.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.99 MB

english, 2017

6

The Artificial Sweetener, Erythritol, Has Insecticidal Properties Against Pear Psylla (Hemiptera: Psyllidae)

Wentz, Katie, Cooper, W Rodney, Horton, David R, Kao, Robert, Nottingham, Louis B, Lee, Jana

Journal:

Journal of Economic Entomology

Année:

2020

Fichier:

PDF, 252 KB

2020

7

gNCA: A framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation

Linh M. Tran, Mark P. Brynildsen, Katy C. Kao, Jason K. Suen, James C. Liao

Journal:

Metabolic Engineering

Année:

2005

Langue:

english

Fichier:

PDF, 386 KB

english, 2005

8

NovelEscherichia colihybrids with enhanced butanol tolerance

James Winkler, Matthew Rehmann, Katy C. Kao

Journal:

Biotechnology Letters

Année:

2010

Langue:

english

Fichier:

PDF, 347 KB

english, 2010

9

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

Kao, Katy C, Sherlock, Gavin

Journal:

Nature Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 400 KB

english, 2008

10

Population dynamics and the evolution of antifungal drug resistance in Candida albicans

Mian Huang, Katy C. Kao

Journal:

FEMS Microbiology Letters

Année:

2012

Langue:

english

Fichier:

PDF, 243 KB

english, 2012

11

Visualizing evolution in real time to determine the molecular mechanisms of n-butanol tolerance in Escherichia coli

Luis H. Reyes, Maria P. Almario, James Winkler, Margarita M. Orozco, Katy C. Kao

Journal:

Metabolic Engineering

Année:

2012

Langue:

english

Fichier:

PDF, 511 KB

english, 2012

12

Harnessing recombination to speed adaptive evolution in Escherichia coli

James Winkler, Katy C. Kao

Journal:

Metabolic Engineering

Année:

2012

Langue:

english

Fichier:

PDF, 504 KB

english, 2012

13

Cumulative Number of Cell Divisions as a Meaningful Timescale for Adaptive Laboratory Evolution of Escherichia coli

Lee, Dae-Hee, Feist, Adam M., Barrett, Christian L., Palsson, Bernhard Ø., Kao, Katy C.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 824 KB

english, 2011

14

Evolutionary engineering of Saccharomyces cerevisiae for enhanced tolerance to hydrolysates of lignocellulosic biomass

Almario, María P., Reyes, Luis H., Kao, Katy C.

Journal:

Biotechnology and Bioengineering

Année:

2013

Langue:

english

Fichier:

PDF, 448 KB

english, 2013

15

Computational identification of adaptive mutants using the VERT system

James Winkler, Katy C Kao

Journal:

Journal of Biological Engineering

Année:

2012

Langue:

english

Fichier:

PDF, 230 KB

english, 2012

16

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Francisco, California (Sunday 23 January 2011)] Visualization and Data Analysis 2011 - OpenOrd: an open-source toolbox for large graph layout

Martin, Shawn, Brown, W. Michael, Klavans, Richard, Boyack, Kevin W., Wong, Pak Chung, Park, Jinah, Hao, Ming C., Chen, Chaomei, Börner, Katy, Kao, David L., Roberts, Jonathan C.

Année:

2011

Langue:

english

Fichier:

PDF, 2.25 MB

english, 2011

17

Improving carotenoids production in yeast via adaptive laboratory evolution

Reyes, Luis H., Gomez, Jose M., Kao, Katy C.

Journal:

Metabolic Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2014

18

Recent advances in the evolutionary engineering of industrial biocatalysts

Winkler, James D., Kao, Katy C.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 425 KB

english, 2014

19

Tools for developing tolerance to toxic chemicals in microbial systems and perspectives on moving the field forward and into the industrial setting

Peabody, George L, Winkler, James, Kao, Katy C.

Journal:

Current Opinion in Chemical Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 380 KB

english, 2014

20

An Inexpensive, Relatively Green, and Rapid Method To Purify Genomic DNA from Escherichia coli : An Experiment for the Undergraduate Biochemistry Laboratory

Sims, Paul A., Branscum, Katie M., Kao, Lydia, Keaveny, Virginia R.

Journal:

Journal of Chemical Education

Année:

2010

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2010

21

A Software Package for cDNA Microarray Data Normalization and Assessing Confidence Intervals

Hyduke, Daniel R., Rohlin, Lars, Kao, Katy C., Liao, James C.

Journal:

Omics A Journal of Integrative Biology

Année:

2003

Langue:

english

Fichier:

PDF, 250 KB

english, 2003

22

Rim sign in breast lesions on diffusion-weighted magnetic resonance imaging: Diagnostic accuracy and clinical usefulness

Kang, Bong Joo, Lipson, Jafi Alyssa, Planey, Katie RoseMary, Zackrisson, Sophia, Ikeda, Debra M., Kao, Jennifer, Pal, Sunita, Moran, Catherine J., Daniel, Bruce Lewis

Journal:

Journal of Magnetic Resonance Imaging

Année:

2015

Langue:

english

Fichier:

PDF, 336 KB

english, 2015

23

Dexamethasone Induces Cross-Linked Actin Networks in Trabecular Meshwork Cells Through Noncanonical Wnt Signaling

Yuan, Yong, Call, Mindy K., Yuan, Yan, Zhang, Yujin, Fischesser, Katy, Liu, Chia-Yang, Kao, Winston W.-Y.

Journal:

Investigative Opthalmology & Visual Science

Année:

2013

Langue:

english

Fichier:

PDF, 728 KB

english, 2013

24

Structure of Escherichia coli AdhP (ethanol-inducible dehydrogenase) with bound NAD

Thomas, Leonard M., Harper, Angelica R., Miner, Whitney A., Ajufo, Helen O., Branscum, Katie M., Kao, Lydia, Sims, Paul A.

Journal:

Acta Crystallographica Section F Structural Biology and Crystallization Communications

Année:

2013

Langue:

english

Fichier:

PDF, 498 KB

english, 2013

25

A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Determinants of Speciation between S. cerevisiae and S. paradoxus, but Suggests More Complex Incompatibilities

Kao, Katy C., Schwartz, Katja, Sherlock, Gavin, Leu, Jun-Yi

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2010

26

Genome shuffling to generate recombinant yeasts for tolerance to inhibitors present in lignocellulosic hydrolysates

Cheng, Clint, Almario, Maria P., Kao, Katy C.

Journal:

Biotechnology Letters

Année:

2015

Langue:

english

Fichier:

PDF, 436 KB

english, 2015

27

SPIE Proceedings [SPIE IS&T/SPIE Electronic Imaging - San Francisco, California (Sunday 23 January 2011)] Visualization and Data Analysis 2011 - Enhancing online timeline visualizations with events and images

Pandya, Abhishek, Mulye, Aniket, Teoh, Soon Tee, Wong, Pak Chung, Park, Jinah, Hao, Ming C., Chen, Chaomei, Börner, Katy, Kao, David L., Roberts, Jonathan C.

Année:

2011

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2011

28

Recent progress in bio-butanol tolerance in microbial systems with an emphasis on Clostridium

Peabody, George L., Kao, Katy C.

Journal:

FEMS Microbiology Letters

Année:

2016

Langue:

english

Fichier:

PDF, 150 KB

english, 2016

29

SPIE Proceedings [SPIE Electronic Imaging 2004 - San Jose, CA (Sunday 18 January 2004)] Visualization and Data Analysis 2004 - Visualization and exploration of spatial probability density functions: a clustering-based approach

Bordoloi, Udeepta D., Kao, David L., Shen, Han-Wei, Erbacher, Robert F., Chen, Philip C., Roberts, Jonathan C., Gr÷hn, Matti T., B÷rner, Katy

Année:

2004

Langue:

english

Fichier:

PDF, 268 KB

english, 2004

30

Characterization of an evolved carotenoids hyper-producer ofSaccharomyces cerevisiaethrough bioreactor parameter optimization and Raman spectroscopy

Olson, Michelle L., Johnson, James, Carswell, William F., Reyes, Luis H., Senger, Ryan S., Kao, Katy C.

Journal:

Journal of Industrial Microbiology & Biotechnology

Année:

2016

Langue:

english

Fichier:

PDF, 901 KB

english, 2016

31

Modelling of batch kinetics of aerobic carotenoid production using Saccharomyces cerevisiae

Ordoñez, M. Carolina, Raftery, Jonathan P., Jaladi, Tejasvi, Chen, Xinhe, Kao, Katy, Karim, M. Nazmul

Journal:

Biochemical Engineering Journal

Année:

2016

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2016

32

Variation in infant EEG power across social and nonsocial contexts

St. John, Ashley M., Kao, Katie, Choksi, Maitreyi, Liederman, Jacqueline, Grieve, Philip G., Tarullo, Amanda R.

Journal:

Journal of Experimental Child Psychology

Année:

2016

Langue:

english

Fichier:

PDF, 641 KB

english, 2016

33

Experimental demonstration of the benefit of a recombination-proficient Escherichia coli system for Adaptive Laboratory Evolution

Peabody, George, Winkler, James, Fountain, Weston, Castro, David A, Leiva-Aravena, Enzo, Kao, Katy C.

Journal:

Applied and Environmental Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2016

34

Using Multiple Outcomes of Sexual Behavior to Provide Insights Into Chlamydia Transmission and the Effectiveness of Prevention Interventions in Adolescents

Enns, Eva Andrea, Kao, Szu-Yu, Kozhimannil, Katy Backes, Kahn, Judith, Farris, Jill, Kulasingam, Shalini L.

Journal:

Sexually Transmitted Diseases

Année:

2017

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2017

35

Maternal cortisol slope at 6 months predicts infant cortisol slope and EEG power at 12 months

St. John, Ashley M., Kao, Katie, Liederman, Jacqueline, Grieve, Philip G., Tarullo, Amanda R.

Journal:

Developmental Psychobiology

Année:

2017

Langue:

english

Fichier:

PDF, 797 KB

english, 2017

36

Salivary cortisol reactivity in preschoolers is associated with hair cortisol and behavioral problems

Kao, Katie, Doan, Stacey N., St. John, Ashley M., Meyer, Jerrold S., Tarullo, Amanda R.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 972 KB

english, 2017

37

Sexual recombination and increased mutation rate expedite evolution of Escherichia coli in varied fitness landscapes

Peabody V, George L., Li, Hao, Kao, Katy C.

Journal:

Nature Communications

Année:

2017

Langue:

english

Fichier:

PDF, 825 KB

english, 2017

38

Relative abundance of Candida albicans and Candida glabrata in in vitro co-culture biofilms impacts biofilm structure and formation

Olson, Michelle L., Jayaraman, Arul, Kao, Katy C.

Journal:

Applied and Environmental Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.50 MB

english, 2018

39

Protective Efficacy of BCG Overexpressing an L,D-Transpeptidase against M. tuberculosis Infection

Nolan, Scott T., Lamichhane, Gyanu, Kao, Katy C.

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.96 MB

english, 2010

40

Bacillus subtilis Two-Component System Sensory Kinase DegS Is Regulated by Serine Phosphorylation in Its Input Domain

Jers, Carsten, Kobir, Ahasanul, Søndergaard, Elsebeth Oline, Jensen, Peter Ruhdal, Mijakovic, Ivan, Kao, Katy C.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2011

41

Genomic Library Screens for Genes Involved in n-Butanol Tolerance in Escherichia coli

Reyes, Luis H., Almario, Maria P., Kao, Katy C., Driessen, Arnold

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2011

42

Determination of Real-Time Efflux Phenotypes in Escherichia coli AcrB Binding Pocket Phenylalanine Mutants Using a 1,2′-Dinaphthylamine Efflux Assay

Bohnert, Jürgen A., Schuster, Sabine, Szymaniak-Vits, Magdalena, Kern, Winfried V., Kao, Katy C.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 200 KB

english, 2011

43

Transcriptional Analysis of Lactobacillus brevis to N-Butanol and Ferulic Acid Stress Responses

Winkler, James, Kao, Katy C., Lin, Baochuan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 295 KB

english, 2011

44

Genome-Scale Consequences of Cofactor Balancing in Engineered Pentose Utilization Pathways in Saccharomyces cerevisiae

Ghosh, Amit, Zhao, Huimin, Price, Nathan D., Kao, Katy C.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 649 KB

english, 2011

45

Visualizing evolution in real-time method for strain engineering

Reyes, Luis H., Winkler, James, Kao, Katy C.

Journal:

Frontiers in Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 743 KB

english, 2012

46

Insights on Osmotic Tolerance Mechanisms in Escherichia coli Gained from an rpoC Mutation

Guo, Yuqi, Winkler, James, Kao, Katy

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 4.39 MB

english, 2017

47

Programmed cell removal by calreticulin in tissue homeostasis and cancer

Feng, Mingye, Marjon, Kristopher D., Zhu, Fangfang, Weissman-Tsukamoto, Rachel, Levett, Aaron, Sullivan, Katie, Kao, Kevin S., Markovic, Maxim, Bump, Paul A., Jackson, Hannah M., Choi, Timothy S., Che

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2018

48

Identifying novel genetic determinants for oxidative stress tolerance in Candida glabrata via adaptive laboratory evolution

Huang, Mian, Kao, Katy C.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 988 KB

english, 2018

49

[ACM Press the 49th ACM Technical Symposium - Baltimore, Maryland, USA (2018.02.21-2018.02.24)] Proceedings of the 49th ACM Technical Symposium on Computer Science Education - SIGCSE '18 - Applying the Mathematical Work of Teaching Framework to Develop a Computer Science Pedagogical Content Knowledge Assessment

Kao, Yvonne, D'Silva, Katie, Hubbard, Aleata, Green, Joseph, Cully, Kimkinyona

Année:

2018

Langue:

english

Fichier:

PDF, 1.28 MB

english, 2018

50

Codesign of Combinatorial Organosolv Pretreatment (COP) and Lignin Nanoparticles (LNPs) in Biorefineries

Liu, Zhi-Hua, Hao, Naijia, Shinde, Somnath, Olson, Michelle L., Bhagia, Samarthya, Dunlap, John R., Kao, Katy C., Kang, Xiaofeng, Ragauskas, Arthur J., Yuan, Joshua S.

Journal:

ACS Sustainable Chemistry & Engineering

Année:

2019

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2019